PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0192s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 179aa    MW: 20195.9 Da    PI: 9.2211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0192s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18555155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                            ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  SapurV1A.0192s0020.1.p  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                            59*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-23565No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32665IPR001471AP2/ERF domain
PfamPF008471.8E-11655IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-20665IPR016177DNA-binding domain
SMARTSM003806.8E-39669IPR001471AP2/ERF domain
PRINTSPR003672.6E-10718IPR001471AP2/ERF domain
PRINTSPR003672.6E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPASHLDQD INLGKDNNSP LPAKELAELL NSKLRKCCGK DPSPSLTCLR LDNDNSRIGV  120
WQKKAGSRSS SDWVMKVELG NYNKKTEPPS KAEIEPEKGT EEEDKIAMQM IEELLNWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16263163ATERF1
3gcc_A1e-16263163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471400.0EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324859.11e-111AP2 domain-containing transcription factor family protein
SwissprotQ3E9585e-74SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA9PFL81e-111A9PFL8_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0018s01680.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-67ERF family protein